Nature Communications (Jan 2022)

Zero-preserving imputation of single-cell RNA-seq data

  • George C. Linderman,
  • Jun Zhao,
  • Manolis Roulis,
  • Piotr Bielecki,
  • Richard A. Flavell,
  • Boaz Nadler,
  • Yuval Kluger

DOI
https://doi.org/10.1038/s41467-021-27729-z
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 11

Abstract

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Missing values in scRNA-seq datasets can bias their analysis. Here, the authors threshold the low rank approximation of the expression matrix, so false zeros can be imputed while true zeros are preserved.