Genome-wide analysis of XTH gene family in cucumber (Cucumis sativus) against different insecticides to enhance defense mechanism

Abstract

This study investigates how plants protect themselves, specifically looking at a group of genes called Xyloglucan Endotransglucosylase/Hydrolase (XTH) in cucumber plants. A detailed investigation of CsXTH genes, uncover their evolutionary background, structural motifs, regulatory networks, and functional responsibilities. The investigation utilized various bioinformatics tools and databases to highlight the dynamic interplay between CsXTH genes and abiotic stress responses. The investigation begins with a phylogenetic analysis that reveals the cladding of CsXTH genes into four categories. Further unraveling the conserved motif and domain analyses expose the coordination of xyloglucan modification, highlighting essential motifs and domains shared among these genes. Analyzing cis-regulatory elements helps us understand the complex networks that control the defense mechanisms of cucumber plants. Among these elements, CGTCA-motif and TGACG-motif stand out as key players in interpreting environmental signals and coordinating stress responses. The microRNA Csa-miR169 is becoming a key player in regulating the expression of CsXTH genes, and controlling the biological responses of cucumber plants. Chromosome mapping, Ka/Ks calculations, and protein-protein interaction analysis offer insights into the structural and evolutionary dynamics of CsXTH genes. Additionally, the study explores sub-cellular localization, uncovering the diverse cellular compartments where CsXTH genes are active. Finally, through chrysophanol and physcion, we unveil the adaptable functions of specific CsXTH genes in response to distinct treatments, underscoring their role in orchestrating cucumber's adaptive strategies.

Keywords

• Xyloglucan Endotransglucosylase/Hydrolase (XTH) genes
• Phylogenetic analysis
• Cis-acting regulatory elements
• miRNA regulation
• Abiotic stress response