The BES1 transcription factor family was unique and critical in plants. The BES1s played roles in the Brassinosteroid (BR) signaling pathway and participated in the plant’s development, maturation, and stress response process. This study investigated the function of the BES1 gene family of 48 horticultural crops by phylogenetic and genomic colinearity network analysis. In addition, the transcriptional regulatory networks had analyzed the process during biotic stress, abiotic stress, fruit development, and postharvest of kiwifruit and peach. The study illustrated a comprehensive understanding of the phylogenetic relationships of the BES1 family in plant genomes and the prediction of growth and development of kiwifruit and peach fruits and maturation-related BES1 members, laying the foundation for further functional studies of BES1 genes in the future.
