Polysaccharide utilization loci encoded DUF1735 likely functions as membrane‐bound spacer for carbohydrate active enzymes

Abstract

Proteins featuring the Domain of Unknown Function 1735 are frequently found in Polysaccharide Utilization Loci, yet their role remains unknown. The domain and vicinity analyzer programs we developed mine the Kyoto Encyclopedia of Genes and Genomes and UniProt to enhance the functional prediction of DUF1735. Our datasets confirmed the exclusive presence of DUF1735 in Bacteroidota genomes, with Bacteroidetes thetaiotaomicron harboring 46 copies. Notably, 97.8% of DUF1735 are encoded in PULs, and 89% are N‐termini of multimodular proteins featuring C‐termini like Laminin_G_3, F5/8‐typeC, and GH18 domains. Predominantly possessing a predicted lipoprotein signal peptide and sharing an immunoglobulin‐like β‐sandwich fold with the BACON domain and the N‐termini of SusE/F, DUF1735 likely functions as N‐terminal, membrane‐bound spacer for diverse C‐termini involved in PUL‐mediated carbohydrate utilization.

Keywords

• Bacteroidetes‐Associated Carbohydrate‐binding often N‐terminal (BACON) domain
• domain analyzer program
• domain of unknown function 1735 (DUF1735)
• N‐terminal spacer
• polysaccharide utilization loci (PULs)
• vicinity analyzer program