IEEE Open Journal of Engineering in Medicine and Biology (Jan 2024)

PseudoCell: Hard Negative Mining as Pseudo Labeling for Deep Learning-Based Centroblast Cell Detection

  • Narongrid Seesawad,
  • Piyalitt Ittichaiwong,
  • Thapanun Sudhawiyangkul,
  • Phattarapong Sawangjai,
  • Peti Thuwajit,
  • Paisarn Boonsakan,
  • Supasan Sripodok,
  • Kanyakorn Veerakanjana,
  • Komgrid Charngkaew,
  • Ananya Pongpaibul,
  • Napat Angkathunyakul,
  • Narit Hnoohom,
  • Sumeth Yuenyong,
  • Chanitra Thuwajit,
  • Theerawit Wilaiprasitporn

DOI
https://doi.org/10.1109/OJEMB.2024.3407351
Journal volume & issue
Vol. 5
pp. 514 – 523

Abstract

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Background: Deep learning models for patch classification in whole-slide images (WSIs) have shown promise in assisting follicular lymphoma grading. However, these models often require pathologists to identify centroblasts and manually provide refined labels for model optimization. Objective: To address this limitation, we propose PseudoCell, an object detection framework for automated centroblast detection in WSI, eliminating the need for extensive pathologist's refined labels. Methods: PseudoCell leverages a combination of pathologist-provided centroblast labels and pseudo-negative labels generated from undersampled false-positive predictions based on cell morphology features. This approach reduces the reliance on time-consuming manual annotations. Results: Our framework significantly reduces the workload for pathologists by accurately identifying and narrowing down areas of interest containing centroblasts. Depending on the confidence threshold, PseudoCell can eliminate 58.18-99.35% of irrelevant tissue areas on WSI, streamlining the diagnostic process. Conclusion: This study presents PseudoCell as a practical and efficient prescreening method for centroblast detection, eliminating the need for refined labels from pathologists. The discussion section provides detailed guidance for implementing PseudoCell in clinical practice.

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