Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature

Abstract

This article provides experimental data describing the RNA and the cell wall protein profiles of rosettes and flower stems of five Arabidopsis thaliana ecotypes. Four newly-described Pyrenees ecotypes [1] are analyzed in addition to the well-described and sequenced Columbia (Col) ecotype of A. thaliana. All five ecotypes have been grown at two different temperatures, 22 °C and 15 °C. We provide transcriptomics and cell wall proteomics data regarding (i) rosettes at the bolting stage, and (ii) floral stems at the first flower stage. These data are a valuable resource to study the adaptation of A. thaliana ecotypes to sub-optimal temperature growth conditions. Keywords: Arabidopsis thaliana, Cell wall, Proteomics, Pyrenees ecotype, Transcriptomics