Nature Communications (Aug 2022)

The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering

  • Joan Hérisson,
  • Thomas Duigou,
  • Melchior du Lac,
  • Kenza Bazi-Kabbaj,
  • Mahnaz Sabeti Azad,
  • Gizem Buldum,
  • Olivier Telle,
  • Yorgo El Moubayed,
  • Pablo Carbonell,
  • Neil Swainston,
  • Valentin Zulkower,
  • Manish Kushwaha,
  • Geoff S. Baldwin,
  • Jean-Loup Faulon

DOI
https://doi.org/10.1038/s41467-022-32661-x
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 12

Abstract

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Automated design and build processes can rapidly accelerate work in synthetic biology and metabolic engineering. Here the authors present Galaxy-SynBioCAD, a toolshed for synthetic biology, metabolic engineering, and industrial biotechnology that they use to build and execute Galaxy scientific workflows from pathway design to strain engineering through the automated generation of scripts driving robotic workstations.