Diagnostics (May 2022)
COVLIAS 1.0<sub>Lesion</sub> vs. MedSeg: An Artificial Intelligence Framework for Automated Lesion Segmentation in COVID-19 Lung Computed Tomography Scans
- Jasjit S. Suri,
- Sushant Agarwal,
- Gian Luca Chabert,
- Alessandro Carriero,
- Alessio Paschè,
- Pietro S. C. Danna,
- Luca Saba,
- Armin Mehmedović,
- Gavino Faa,
- Inder M. Singh,
- Monika Turk,
- Paramjit S. Chadha,
- Amer M. Johri,
- Narendra N. Khanna,
- Sophie Mavrogeni,
- John R. Laird,
- Gyan Pareek,
- Martin Miner,
- David W. Sobel,
- Antonella Balestrieri,
- Petros P. Sfikakis,
- George Tsoulfas,
- Athanasios D. Protogerou,
- Durga Prasanna Misra,
- Vikas Agarwal,
- George D. Kitas,
- Jagjit S. Teji,
- Mustafa Al-Maini,
- Surinder K. Dhanjil,
- Andrew Nicolaides,
- Aditya Sharma,
- Vijay Rathore,
- Mostafa Fatemi,
- Azra Alizad,
- Pudukode R. Krishnan,
- Ferenc Nagy,
- Zoltan Ruzsa,
- Mostafa M. Fouda,
- Subbaram Naidu,
- Klaudija Viskovic,
- Manudeep K. Kalra
Affiliations
- Jasjit S. Suri
- Stroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA
- Sushant Agarwal
- Advanced Knowledge Engineering Centre, GBTI, Roseville, CA 95661, USA
- Gian Luca Chabert
- Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy
- Alessandro Carriero
- Department of Radiology, “Maggiore della Carità” Hospital, University of Piemonte Orientale (UPO), Via Solaroli 17, 28100 Novara, Italy
- Alessio Paschè
- Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy
- Pietro S. C. Danna
- Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy
- Luca Saba
- Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy
- Armin Mehmedović
- University Hospital for Infectious Diseases, 10000 Zagreb, Croatia
- Gavino Faa
- Department of Pathology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy
- Inder M. Singh
- Stroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA
- Monika Turk
- The Hanse-Wissenschaftskolleg Institute for Advanced Study, 27753 Delmenhorst, Germany
- Paramjit S. Chadha
- Stroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA
- Amer M. Johri
- Department of Medicine, Division of Cardiology, Queen’s University, Kingston, ON K7L 3N6, Canada
- Narendra N. Khanna
- Department of Cardiology, Indraprastha APOLLO Hospitals, New Delhi 110076, India
- Sophie Mavrogeni
- Cardiology Clinic, Onassis Cardiac Surgery Center, 17674 Athens, Greece
- John R. Laird
- Heart and Vascular Institute, Adventist Health St. Helena, St Helena, CA 94574, USA
- Gyan Pareek
- Minimally Invasive Urology Institute, Brown University, Providence, RI 02912, USA
- Martin Miner
- Men’s Health Center, Miriam Hospital, Providence, RI 02906, USA
- David W. Sobel
- Minimally Invasive Urology Institute, Brown University, Providence, RI 02912, USA
- Antonella Balestrieri
- Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy
- Petros P. Sfikakis
- Rheumatology Unit, National Kapodistrian University of Athens, 15772 Athens, Greece
- George Tsoulfas
- Department of Surgery, Aristoteleion University of Thessaloniki, 54124 Thessaloniki, Greece
- Athanasios D. Protogerou
- Cardiovascular Prevention and Research Unit, Department of Pathophysiology, National & Kapodistrian University of Athens, 15772 Athens, Greece
- Durga Prasanna Misra
- Department of Immunology, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow 226014, India
- Vikas Agarwal
- Department of Immunology, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow 226014, India
- George D. Kitas
- Academic Affairs, Dudley Group NHS Foundation Trust, Dudley DY1 2HQ, UK
- Jagjit S. Teji
- Ann and Robert H. Lurie Children’s Hospital of Chicago, Chicago, IL 60611, USA
- Mustafa Al-Maini
- Allergy, Clinical Immunology and Rheumatology Institute, Toronto, ON L4Z 4C4, Canada
- Surinder K. Dhanjil
- AtheroPoint LLC, Roseville, CA 95661, USA
- Andrew Nicolaides
- Vascular Screening and Diagnostic Centre, University of Nicosia Medical School, Nicosia 2408, Cyprus
- Aditya Sharma
- Division of Cardiovascular Medicine, University of Virginia, Charlottesville, VA 22908, USA
- Vijay Rathore
- AtheroPoint LLC, Roseville, CA 95661, USA
- Mostafa Fatemi
- Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA
- Azra Alizad
- Department of Radiology, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA
- Pudukode R. Krishnan
- Neurology Department, Fortis Hospital, Bangalore 560076, India
- Ferenc Nagy
- Internal Medicine Department, University of Szeged, 6725 Szeged, Hungary
- Zoltan Ruzsa
- Invasive Cardiology Division, University of Szeged, 6725 Szeged, Hungary
- Mostafa M. Fouda
- Department of Electrical and Computer Engineering, Idaho State University, Pocatello, ID 83209, USA
- Subbaram Naidu
- Electrical Engineering Department, University of Minnesota, Duluth, MN 55812, USA
- Klaudija Viskovic
- University Hospital for Infectious Diseases, 10000 Zagreb, Croatia
- Manudeep K. Kalra
- Department of Radiology, Massachusetts General Hospital, 55 Fruit Street, Boston, MA 02114, USA
- DOI
- https://doi.org/10.3390/diagnostics12051283
- Journal volume & issue
-
Vol. 12,
no. 5
p. 1283
Abstract
Background: COVID-19 is a disease with multiple variants, and is quickly spreading throughout the world. It is crucial to identify patients who are suspected of having COVID-19 early, because the vaccine is not readily available in certain parts of the world. Methodology: Lung computed tomography (CT) imaging can be used to diagnose COVID-19 as an alternative to the RT-PCR test in some cases. The occurrence of ground-glass opacities in the lung region is a characteristic of COVID-19 in chest CT scans, and these are daunting to locate and segment manually. The proposed study consists of a combination of solo deep learning (DL) and hybrid DL (HDL) models to tackle the lesion location and segmentation more quickly. One DL and four HDL models—namely, PSPNet, VGG-SegNet, ResNet-SegNet, VGG-UNet, and ResNet-UNet—were trained by an expert radiologist. The training scheme adopted a fivefold cross-validation strategy on a cohort of 3000 images selected from a set of 40 COVID-19-positive individuals. Results: The proposed variability study uses tracings from two trained radiologists as part of the validation. Five artificial intelligence (AI) models were benchmarked against MedSeg. The best AI model, ResNet-UNet, was superior to MedSeg by 9% and 15% for Dice and Jaccard, respectively, when compared against MD 1, and by 4% and 8%, respectively, when compared against MD 2. Statistical tests—namely, the Mann–Whitney test, paired t-test, and Wilcoxon test—demonstrated its stability and reliability, with p Lesion lesion locator passed the intervariability test.
Keywords