Endonuclease mimetic activity of laccase with sequence preference following redox potential and interaction of bases

Abstract

Degradation of lignin, a natural macromolecule, by laccase via substrate radicals has been intensively studied. However, the interactions between laccase and DNA have not been thoroughly elucidated to date. In this report, we demonstrate that laccase has the endonuclease-mimetic activity with the sequence preference. The decay of plasmid and cDNA was observed with atomic force microscopy (AFM), electron paramagnetic resonance (EPR) and DNA sequencing. Concomitantly, Image 1 appeared, which produced the DNA lesion. The sequencing results showed that A and AA were the preferred nucleotides flanking the cleaved sites. The hydrogen bonds between complementary base pairs and the base redox potential were responsible for the long-lived charge transfer state within the A-repetitive sequence governing the sequence preference. This discovery implies alternative strategies of surviving the phosphorus stress and resistance to alien DNA in certain species, in which laccase is abundant. These results enrich our understanding of the mechanisms of DNA damage and are important for the interpretation of disease treatment.

Keywords

• AFM
• Laccase
• DNA lesion
• A repetitive sequence propensity
• Endonuclease