Mathematical Biosciences and Engineering (Jul 2023)

Fast clustering algorithm based on MST of representative points

  • Hui Du,
  • Depeng Lu,
  • Zhihe Wang ,
  • Cuntao Ma ,
  • Xinxin Shi,
  • Xiaoli Wang

DOI
https://doi.org/10.3934/mbe.2023705
Journal volume & issue
Vol. 20, no. 9
pp. 15830 – 15858

Abstract

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Minimum spanning tree (MST)-based clustering algorithms are widely used to detect clusters with diverse densities and irregular shapes. However, most algorithms require the entire dataset to construct an MST, which leads to significant computational overhead. To alleviate this issue, our proposed algorithm R-MST utilizes representative points instead of all sample points for constructing MST. Additionally, based on the density and nearest neighbor distance, we improved the representative point selection strategy to enhance the uniform distribution of representative points in sparse areas, enabling the algorithm to perform well on datasets with varying densities. Furthermore, traditional methods for eliminating inconsistent edges generally require prior knowledge about the number of clusters, which is not always readily available in practical applications. Therefore, we propose an adaptive method that employs mutual neighbors to identify inconsistent edges and determine the optimal number of clusters automatically. The experimental results indicate that the R-MST algorithm not only improves the efficiency of clustering but also enhances its accuracy.

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