Nature Communications (Jun 2022)
Disentangling the genetic basis of rhizosphere microbiome assembly in tomato
- Ben O. Oyserman,
- Stalin Sarango Flores,
- Thom Griffioen,
- Xinya Pan,
- Elmar van der Wijk,
- Lotte Pronk,
- Wouter Lokhorst,
- Azkia Nurfikari,
- Joseph N. Paulson,
- Mercedeh Movassagh,
- Nejc Stopnisek,
- Anne Kupczok,
- Viviane Cordovez,
- Víctor J. Carrión,
- Wilco Ligterink,
- Basten L. Snoek,
- Marnix H. Medema,
- Jos M. Raaijmakers
Affiliations
- Ben O. Oyserman
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Stalin Sarango Flores
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Thom Griffioen
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Xinya Pan
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Elmar van der Wijk
- Bioinformatics Group, Wageningen University
- Lotte Pronk
- Bioinformatics Group, Wageningen University
- Wouter Lokhorst
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Azkia Nurfikari
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Joseph N. Paulson
- Department of Data Sciences, Genentech, Inc. South San Francisco
- Mercedeh Movassagh
- Department of Biostatistics, Harvard T.H. Chan School of Public Health
- Nejc Stopnisek
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Anne Kupczok
- Bioinformatics Group, Wageningen University
- Viviane Cordovez
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Víctor J. Carrión
- Department of Microbial Ecology, Netherlands Institute of Ecology
- Wilco Ligterink
- Wageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University
- Basten L. Snoek
- Theoretical Biology and Bioinformatics, Utrecht University
- Marnix H. Medema
- Bioinformatics Group, Wageningen University
- Jos M. Raaijmakers
- Department of Microbial Ecology, Netherlands Institute of Ecology
- DOI
- https://doi.org/10.1038/s41467-022-30849-9
- Journal volume & issue
-
Vol. 13,
no. 1
pp. 1 – 16
Abstract
Genetics factors involved in rhizosphere microbiomes assembly remain largely elusive. Here, the authors integrate microbiomics and quantitative plant genetics to reveal genetic loci associated with specific microbes and rhizobacterial traits underlying microbiome assembly in tomato.
