Journal of Biomedical Semantics (May 2019)

Ontology-based specification and generation of search queries for post-market surveillance

  • Alexandr Uciteli,
  • Stefan Kropf,
  • Timo Weiland,
  • Stefanie Meese,
  • Klaus Graef,
  • Sabrina Rohrer,
  • Marc O. Schurr,
  • Wolfram Bartussek,
  • Christoph Goller,
  • Philipp Blohm,
  • Robin Seidel,
  • Christian Bayer,
  • Manuel Kernenbach,
  • Kathrin Pfeiffer,
  • Wolfgang Lauer,
  • Jörg-Uwe Meyer,
  • Michael Witte,
  • Heinrich Herre

DOI
https://doi.org/10.1186/s13326-019-0203-7
Journal volume & issue
Vol. 10, no. 1
pp. 1 – 13

Abstract

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Abstract Background The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. PMS needs to be supported by an efficient search strategy and the possibility to create complex search queries by domain experts. Results We use ontologies to support the specification of search queries and the preparation of the document corpus, which contains all relevant documents. In this paper, we present (1) the Search Ontology (SON) v2.0, (2) an Excel template for specifying search queries, and (3) the Search Ontology Generator (SONG), which generates complex queries out of the Excel template. Based on our approach, a service-oriented architecture was designed, which supports and assists domain experts during PMS. Comprehensive testing confirmed the correct execution of all SONG functions. The applicability of our method and of the developed tools was evaluated by domain experts. The test persons concordantly rated our solution after a short period of training as highly user-friendly, intuitive and well applicable for supporting PMS. Conclusions The Search Ontology is a promising domain-independent approach to specify complex search queries. Our solution allows advanced searches for relevant documents in different domains using suitable domain ontologies.

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