G3: Genes, Genomes, Genetics (Nov 2022)
A chromosome-length genome assembly and annotation of blackberry (<i>Rubus argutus</i>, cv. “Hillquist”)
- Tomáš Brůna,
- Rishi Aryal,
- Olga Dudchenko,
- Daniel James Sargent,
- Daniel Mead,
- Matteo Buti,
- Andrea Cavallini,
- Timo Hytönen,
- Javier Andrés,
- Melanie Pham,
- David Weisz,
- Flavia Mascagni,
- Gabriele Usai,
- Lucia Natali,
- Nahla Bassil,
- Gina E Fernandez,
- Alexandre Lomsadze,
- Mitchell Armour,
- Bode Olukolu,
- Thomas Poorten,
- Caitlin Britton,
- Jahn Davik,
- Hamid Ashrafi,
- Erez Lieberman Aiden,
- Mark Borodovsky,
- Margaret Worthington
Affiliations
- Tomáš Brůna
- ORCiD
- School of Biological Sciences, Center for Bioinformatics and Computational Genomics, Georgia Tech, Atlanta, GA 30332, USA
- Rishi Aryal
- ORCiD
- Department of Horticultural Science, North Carolina State University, Raleigh, NC 27607, USA
- Olga Dudchenko
- ORCiD
- The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA
- Daniel James Sargent
- ORCiD
- Department of Genetics, Genomics and Breeding, NIAB-EMR, East Malling, Kent, UK
- Daniel Mead
- ORCiD
- Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK
- Matteo Buti
- ORCiD
- Department of Agriculture, Food, Environment and Forestry (DAGRI), University of Florence, Florence, Italy
- Andrea Cavallini
- ORCiD
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
- Timo Hytönen
- ORCiD
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, 00790 Helsinki, Finland
- Javier Andrés
- ORCiD
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, 00790 Helsinki, Finland
- Melanie Pham
- ORCiD
- Department of Molecular and Human Genetics, Baylor College of Medicine, The Center for Genome Architecture, Houston, TX 77030, USA
- David Weisz
- ORCiD
- Department of Molecular and Human Genetics, Baylor College of Medicine, The Center for Genome Architecture, Houston, TX 77030, USA
- Flavia Mascagni
- ORCiD
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
- Gabriele Usai
- ORCiD
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
- Lucia Natali
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
- Nahla Bassil
- ORCiD
- USDA-ARS, National Clonal Germplasm Repository, Corvallis, OR 97333, USA
- Gina E Fernandez
- ORCiD
- Department of Horticultural Science, North Carolina State University, Raleigh, NC 27607, USA
- Alexandre Lomsadze
- Department of Biomedical Engineering, Center for Bioinformatics and Computational Genomics, Georgia Tech, Atlanta, GA 30332, USA
- Mitchell Armour
- Department of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA
- Bode Olukolu
- ORCiD
- Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996, USA
- Thomas Poorten
- ORCiD
- Pairwise, Durham, NC 27701, USA
- Caitlin Britton
- Pairwise, Durham, NC 27701, USA
- Jahn Davik
- ORCiD
- Department of Molecular Plant Biology, Norwegian Institute of Bioeconomy Research, N-1431 Ås, Norway
- Hamid Ashrafi
- ORCiD
- Department of Horticultural Science, North Carolina State University, Raleigh, NC 27695, USA
- Erez Lieberman Aiden
- ORCiD
- Department of Computer Science, Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA
- Mark Borodovsky
- Department of Biomedical Engineering, School of Computational Science and Engineering, Center for Bioinformatics and Computational Genomics, Georgia Tech, Atlanta, GA 30332 USA
- Margaret Worthington
- ORCiD
- Department of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA
- DOI
- https://doi.org/10.1093/g3journal/jkac289
- Journal volume & issue
-
Vol. 13,
no. 2
Abstract
AbstractBlackberries (RubusRubusIdaeobatusR. occidentalisR. idaeusR. chingiiRubusR. argutusR. chingiiRubus
