Nature Communications (Jul 2020)

Protein–ligand binding with the coarse-grained Martini model

  • Paulo C. T. Souza,
  • Sebastian Thallmair,
  • Paolo Conflitti,
  • Carlos Ramírez-Palacios,
  • Riccardo Alessandri,
  • Stefano Raniolo,
  • Vittorio Limongelli,
  • Siewert J. Marrink

DOI
https://doi.org/10.1038/s41467-020-17437-5
Journal volume & issue
Vol. 11, no. 1
pp. 1 – 11

Abstract

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Computer-aided design of protein-ligand binding is important for the development of novel drugs. Here authors present an approach to use the recently re-parametrized coarse-grained Martini model to perform unbiased millisecond sampling of protein-ligand binding interactions of small drug-like molecules.