Abstract P-15: Cryo-Electron Microscopy Study of Dehydrogenase Complexes Interaction with Oxidative Phosphorylation System Supercomplex

Abstract

Background: Electron transport chain (ETC) complexes, pyruvate dehydrogenase complex (PDC), and α-ketoglutarate dehydrogenase complex (KGDC) are important elements in mitochondrial metabolism. The localization of the aforementioned protein complexes differs since oxidative phosphorylation complexes are membrane proteins, while dehydrogenase complexes (DCs) are contained in the mitochondrial matrix. Our previous cryo-electron tomography (cryo-ET) studies showed the existence of a full oxidative phosphorylation system supercomplex consisting of ETC complexes and ATP synthases (Nesterov et al., 2021). Literature data also shows the binding of fatty acid oxidation enzymes to ETC complex I (Wang et al., 2010). Although it has long been shown that PDCs can bind to complex I (Sumegi et al., 1984) in vitro, this has not been visualized directly in mitochondria and the binding mechanisms are still unknown. Methods: The mitochondria were isolated from Wistar rat heart ventricles according to a standard procedure (Nesterov et al., 2021). The dense mitochondrial suspension was diluted to ~0.3mg/ml in a respiration medium. Phosphorylation was started 10 minutes prior to vitrification. Experimental data was obtained by cryo-ET using Titan Krios and processed with IMOD and RELION. Results: The tomograms show that the significant part of DCs is localized near the inner membrane of partially destroyed mitochondria in an array-like fashion. Sole PDCs and KGDCs can be identified on the images and their position appears to be close to ETC complex I. Subtomogram averaging of close to the membrane DCs showed that there is no specific density between them, suggesting that they are not linked with identical proteins or that this link may be soft. Significant damage to the mitochondrial membrane leads to the formation of membrane-unbound DCs fraction. It suggests that coupling of DCs with ETC complexes can be controlled in vivo by the topology of the inner mitochondrial membrane and the volume of the mitochondrial matrix. Conclusion: The obtained results show a possibility of unprecedentedly large multienzyme complex formation, including almost all main mitochondrial metabolic systems. Although cryo-ET of partially destroyed mitochondria showed close localization of PDC and KGDC to complex I, further studies are required in intact mitochondria. The mechanism of their binding also remains an open question.

Keywords

• cryo-et
• pyruvate dehydrogenase complex
• α-ketoglutarate dehydrogenase complex
• oxidative phosphorylation