Nature Communications (Jul 2024)

Pseudoirreversible inhibition elicits persistent efficacy of a sphingosine 1-phosphate receptor 1 antagonist

  • Yuya Maruyama,
  • Yusuke Ohsawa,
  • Takayuki Suzuki,
  • Yuko Yamauchi,
  • Kohsuke Ohno,
  • Hitoshi Inoue,
  • Akitoshi Yamamoto,
  • Morimichi Hayashi,
  • Yuji Okuhara,
  • Wataru Muramatsu,
  • Kano Namiki,
  • Naho Hagiwara,
  • Maki Miyauchi,
  • Takahisa Miyao,
  • Tatsuya Ishikawa,
  • Kenta Horie,
  • Mio Hayama,
  • Nobuko Akiyama,
  • Takatsugu Hirokawa,
  • Taishin Akiyama

DOI
https://doi.org/10.1038/s41467-024-49893-8
Journal volume & issue
Vol. 15, no. 1
pp. 1 – 17

Abstract

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Abstract Sphingosine 1-phosphate receptor 1 (S1PR1), a G protein-coupled receptor, is required for lymphocyte trafficking, and is a promising therapeutic target in inflammatory diseases. Here, we synthesize a competitive S1PR1 antagonist, KSI-6666, that effectively suppresses pathogenic inflammation. Metadynamics simulations suggest that the interaction of KSI-6666 with a methionine residue Met124 in the ligand-binding pocket of S1PR1 may inhibit the dissociation of KSI-6666 from S1PR1. Consistently, in vitro functional and mutational analyses reveal that KSI-6666 causes pseudoirreversible inhibition of S1PR1, dependent on the Met124 of the protein and substituents on the distal benzene ring of KSI-6666. Moreover, in vivo study suggests that this pseudoirreversible inhibition is responsible for the persistent activity of KSI-6666.