Conserved Sequences in the 5′ and 3′ Untranslated Regions of Jingmenvirus Group Representatives

Abstract

The Jingmenvirus group (JVG), with members such as Jingmen tick virus (JMTV), Alongshan virus (ALSV), Yanggou tick virus (YGTV), and Takachi virus (TAKV), is drawing attention due to evidence of it causing disease in humans and its unique genome architecture. In the current work, complete untranslated regions (UTRs) of four strains of ALSV and eight strains of YGTV were obtained. An analysis of these sequences, as well as JVG sequences from GenBank, uncovered several regions within viral UTRs that were highly conserved for all the segments and viruses. Bioinformatics predictions suggested that the UTRs of all the segments of YGTV, ALSV, and JMTV could form similar RNA structures. The most notable feature of these structures was a stable stem-loop with one (5′ UTR) or two (3′ UTR) AAGU tetraloops on the end of a hairpin.

Keywords

• Alongshan virus
• Yanggou tick virus
• Jingmenvirus group
• flavi-like virus
• segmented virus
• untranslated region