Molecular Systems Biology (Oct 2015)
Do genome‐scale models need exact solvers or clearer standards?
- Ali Ebrahim,
- Eivind Almaas,
- Eugen Bauer,
- Aarash Bordbar,
- Anthony P Burgard,
- Roger L Chang,
- Andreas Dräger,
- Iman Famili,
- Adam M Feist,
- Ronan MT Fleming,
- Stephen S Fong,
- Vassily Hatzimanikatis,
- Markus J Herrgård,
- Allen Holder,
- Michael Hucka,
- Daniel Hyduke,
- Neema Jamshidi,
- Sang Yup Lee,
- Nicolas Le Novère,
- Joshua A Lerman,
- Nathan E Lewis,
- Ding Ma,
- Radhakrishnan Mahadevan,
- Costas Maranas,
- Harish Nagarajan,
- Ali Navid,
- Jens Nielsen,
- Lars K Nielsen,
- Juan Nogales,
- Alberto Noronha,
- Csaba Pal,
- Bernhard O Palsson,
- Jason A Papin,
- Kiran R Patil,
- Nathan D Price,
- Jennifer L Reed,
- Michael Saunders,
- Ryan S Senger,
- Nikolaus Sonnenschein,
- Yuekai Sun,
- Ines Thiele
Affiliations
- Ali Ebrahim
- Department of Bioengineering, University of California
- Eivind Almaas
- Department of Biotechnology, Norwegian University of Science and Technology (NTNU)
- Eugen Bauer
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg
- Aarash Bordbar
- Sinopia Biosciences Inc.
- Anthony P Burgard
- Genomatica, Inc.
- Roger L Chang
- Department of Systems Biology, Harvard Medical School
- Andreas Dräger
- Department of Bioengineering, University of California
- Iman Famili
- Intrexon, Inc.
- Adam M Feist
- Department of Bioengineering, University of California
- Ronan MT Fleming
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg
- Stephen S Fong
- Department of Chemical and Life Science Engineering, Virginia Commonwealth University
- Vassily Hatzimanikatis
- Laboratory of Computational Systems Biotechnology, Ecole Polytechnique Fédérale de Lausanne
- Markus J Herrgård
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark
- Allen Holder
- Department of Mathematics, Rose‐Hulman Institute of Technology
- Michael Hucka
- Department of Computing and Mathematical Science, California Institute of Technology
- Daniel Hyduke
- Department of Biological Engineering, Utah State University
- Neema Jamshidi
- Department of Radiology, University of California
- Sang Yup Lee
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark
- Nicolas Le Novère
- Babraham Institute
- Joshua A Lerman
- Department of Bioengineering, University of California
- Nathan E Lewis
- Department of Pediatrics, University of California
- Ding Ma
- Department of Management Science and Engineering, Stanford University
- Radhakrishnan Mahadevan
- Department of Chemical Engineering and Applied Chemistry, University of Toronto
- Costas Maranas
- Department of Chemical Engineering, Pennsylvania State University
- Harish Nagarajan
- Genomatica, Inc.
- Ali Navid
- Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory
- Jens Nielsen
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark
- Lars K Nielsen
- Australian Institute for Bioengineering & Nanotechnology (AIBN), The University of Queensland
- Juan Nogales
- Department of Environmental Biology, Centro de Investigaciones Biológicas (CSIC)
- Alberto Noronha
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg
- Csaba Pal
- Synthetic and Systems Biology Unit, Biological Research Center
- Bernhard O Palsson
- Department of Bioengineering, University of California
- Jason A Papin
- Department of Biomedical Engineering, University of Virginia
- Kiran R Patil
- European Molecular Biology Laboratory
- Nathan D Price
- Institute for Systems Biology
- Jennifer L Reed
- Department of Chemical and Biological Engineering, University of Wisconsin‐Madison
- Michael Saunders
- Department of Management Science and Engineering, Stanford University
- Ryan S Senger
- Department of Biological Systems Engineering, Virginia Tech
- Nikolaus Sonnenschein
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark
- Yuekai Sun
- Institute for Computational and Mathematical Engineering, Stanford University
- Ines Thiele
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg
- DOI
- https://doi.org/10.15252/msb.20156157
- Journal volume & issue
-
Vol. 11,
no. 10
pp. 1 – 3
Abstract
Graphical Abstract Recent results obtained by Chindelevitch et al (2014) are challenged by Ebrahim et al, illustrating several issues in the reproducibility of computational biology methods.
