Native rhizobium strains are lacking in some agricultural soils in NE South Africa

Abstract

Rhizobia is a group of gram-negative soil-borne bacteria with several beneficial strains for biological nitrogen fixation in legume crops. Rhizobium strains are found native in the soil but where they are absent, commercial strains are inoculated on crops. We assessed the availability of native rhizobia in chickpea fields at two sites, with contrasting soil types, in NE South Africa. Serial dilutions were used to identify bacteria from soil samples and chickpea nodules sampled before sowing and at flowering, respectively. Our results indicated the absence of rhizobia strains at both sites. Burkholderia cenocepacia, Klebsiella variicola, Bacillus subtilis and Ochrobactrum spp, which are not important in agriculture but are often reported in clinical environments, were identified. Therefore, inoculating chickpea with compatible rhizobia strains may be necessary in some soils in this region.

Keywords

• chickpea
• dna extraction
• inoculation
• nodulation
• 16s rrna gene