Light: Science & Applications (Jan 2024)
Observation of a single protein by ultrafast X-ray diffraction
- Tomas Ekeberg,
- Dameli Assalauova,
- Johan Bielecki,
- Rebecca Boll,
- Benedikt J. Daurer,
- Lutz A. Eichacker,
- Linda E. Franken,
- Davide E. Galli,
- Luca Gelisio,
- Lars Gumprecht,
- Laura H. Gunn,
- Janos Hajdu,
- Robert Hartmann,
- Dirk Hasse,
- Alexandr Ignatenko,
- Jayanath Koliyadu,
- Olena Kulyk,
- Ruslan Kurta,
- Markus Kuster,
- Wolfgang Lugmayr,
- Jannik Lübke,
- Adrian P. Mancuso,
- Tommaso Mazza,
- Carl Nettelblad,
- Yevheniy Ovcharenko,
- Daniel E. Rivas,
- Max Rose,
- Amit K. Samanta,
- Philipp Schmidt,
- Egor Sobolev,
- Nicusor Timneanu,
- Sergey Usenko,
- Daniel Westphal,
- Tamme Wollweber,
- Lena Worbs,
- Paul Lourdu Xavier,
- Hazem Yousef,
- Kartik Ayyer,
- Henry N. Chapman,
- Jonas A. Sellberg,
- Carolin Seuring,
- Ivan A. Vartanyants,
- Jochen Küpper,
- Michael Meyer,
- Filipe R. N. C. Maia
Affiliations
- Tomas Ekeberg
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University
- Dameli Assalauova
- Deutsches Electronen-Synchrotron DESY
- Johan Bielecki
- European XFEL
- Rebecca Boll
- European XFEL
- Benedikt J. Daurer
- Diamond Light Source, Harwell Science & Innovation Campus
- Lutz A. Eichacker
- University of Stavanger, Centre Organelle Research
- Linda E. Franken
- Leibniz Institute for Experimental Virology (HPI), Centre for Structural Systems Biology
- Davide E. Galli
- Dipartimento di Fisica “Aldo Pontremoli”, Università degli Studi di Milano
- Luca Gelisio
- Deutsches Electronen-Synchrotron DESY
- Lars Gumprecht
- Center for Free-Electron Laser Science, DESY
- Laura H. Gunn
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University
- Janos Hajdu
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University
- Robert Hartmann
- PNSensor GmbH
- Dirk Hasse
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University
- Alexandr Ignatenko
- Deutsches Electronen-Synchrotron DESY
- Jayanath Koliyadu
- European XFEL
- Olena Kulyk
- ELI Beamlines/IoP Institute of Physics AS CR, v.v.i.
- Ruslan Kurta
- European XFEL
- Markus Kuster
- European XFEL
- Wolfgang Lugmayr
- Multi-User CryoEM Facility, Centre for Structural Systems Biology
- Jannik Lübke
- Center for Free-Electron Laser Science, DESY
- Adrian P. Mancuso
- European XFEL
- Tommaso Mazza
- European XFEL
- Carl Nettelblad
- Division of Scientific Computing, Science for Life Laboratory, Department of Information Technology, Uppsala University
- Yevheniy Ovcharenko
- European XFEL
- Daniel E. Rivas
- European XFEL
- Max Rose
- Deutsches Electronen-Synchrotron DESY
- Amit K. Samanta
- Center for Free-Electron Laser Science, DESY
- Philipp Schmidt
- European XFEL
- Egor Sobolev
- European XFEL
- Nicusor Timneanu
- Department of Physics and Astronomy, Uppsala University
- Sergey Usenko
- European XFEL
- Daniel Westphal
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University
- Tamme Wollweber
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg
- Lena Worbs
- Center for Free-Electron Laser Science, DESY
- Paul Lourdu Xavier
- European XFEL
- Hazem Yousef
- European XFEL
- Kartik Ayyer
- The Hamburg Center for Ultrafast Imaging, Universität Hamburg
- Henry N. Chapman
- Center for Free-Electron Laser Science, DESY
- Jonas A. Sellberg
- Biomedical and X-Ray Physics, Department of Applied Physics, AlbaNova University Center, KTH Royal Institute of Technology
- Carolin Seuring
- Multi-User CryoEM Facility, Centre for Structural Systems Biology
- Ivan A. Vartanyants
- Deutsches Electronen-Synchrotron DESY
- Jochen Küpper
- Center for Free-Electron Laser Science, DESY
- Michael Meyer
- European XFEL
- Filipe R. N. C. Maia
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University
- DOI
- https://doi.org/10.1038/s41377-023-01352-7
- Journal volume & issue
-
Vol. 13,
no. 1
pp. 1 – 11
Abstract
Abstract The idea of using ultrashort X-ray pulses to obtain images of single proteins frozen in time has fascinated and inspired many. It was one of the arguments for building X-ray free-electron lasers. According to theory, the extremely intense pulses provide sufficient signal to dispense with using crystals as an amplifier, and the ultrashort pulse duration permits capturing the diffraction data before the sample inevitably explodes. This was first demonstrated on biological samples a decade ago on the giant mimivirus. Since then, a large collaboration has been pushing the limit of the smallest sample that can be imaged. The ability to capture snapshots on the timescale of atomic vibrations, while keeping the sample at room temperature, may allow probing the entire conformational phase space of macromolecules. Here we show the first observation of an X-ray diffraction pattern from a single protein, that of Escherichia coli GroEL which at 14 nm in diameter is the smallest biological sample ever imaged by X-rays, and demonstrate that the concept of diffraction before destruction extends to single proteins. From the pattern, it is possible to determine the approximate orientation of the protein. Our experiment demonstrates the feasibility of ultrafast imaging of single proteins, opening the way to single-molecule time-resolved studies on the femtosecond timescale.