eLife (Oct 2020)

The HIV-1 latent reservoir is largely sensitive to circulating T cells

  • Joanna A Warren,
  • Shuntai Zhou,
  • Yinyan Xu,
  • Matthew J Moeser,
  • Daniel R MacMillan,
  • Olivia Council,
  • Jennifer Kirchherr,
  • Julia M Sung,
  • Nadia R Roan,
  • Adaora A Adimora,
  • Sarah Joseph,
  • JoAnn D Kuruc,
  • Cynthia L Gay,
  • David M Margolis,
  • Nancie Archin,
  • Zabrina L Brumme,
  • Ronald Swanstrom,
  • Nilu Goonetilleke

DOI
https://doi.org/10.7554/eLife.57246
Journal volume & issue
Vol. 9

Abstract

Read online

HIV-1-specific CD8+ T cells are an important component of HIV-1 curative strategies. Viral variants in the HIV-1 reservoir may limit the capacity of T cells to detect and clear virus-infected cells. We investigated the patterns of T cell escape variants in the replication-competent reservoir of 25 persons living with HIV-1 (PLWH) durably suppressed on antiretroviral therapy (ART). We identified all reactive T cell epitopes in the HIV-1 proteome for each participant and sequenced HIV-1 outgrowth viruses from resting CD4+ T cells. All non-synonymous mutations in reactive T cell epitopes were tested for their effect on the size of the T cell response, with a≥50% loss defined as an escape mutation. The majority (68%) of T cell epitopes harbored no detectable escape mutations. These findings suggest that circulating T cells in PLWH on ART could contribute to control of rebound and could be targeted for boosting in curative strategies.

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