EndoNuke: Nuclei Detection Dataset for Estrogen and Progesterone Stained IHC Endometrium Scans

Anton Naumov; Egor Ushakov; Andrey Ivanov; Konstantin Midiber; Tatyana Khovanskaya; Alexandra Konyukova; Polina Vishnyakova; Sergei Nora; Liudmila Mikhaleva; Timur Fatkhudinov; Evgeny Karpulevich

doi:10.3390/data7060075

Data (Jun 2022)

EndoNuke: Nuclei Detection Dataset for Estrogen and Progesterone Stained IHC Endometrium Scans

Anton Naumov,
Egor Ushakov,
Andrey Ivanov,
Konstantin Midiber,
Tatyana Khovanskaya,
Alexandra Konyukova,
Polina Vishnyakova,
Sergei Nora,
Liudmila Mikhaleva,
Timur Fatkhudinov,
Evgeny Karpulevich

Affiliations

Anton Naumov: Information Systems Department, Ivannikov Institute for System Programming, Russian Academy of Sciences (ISP RAS), 109004 Moscow, Russia
Egor Ushakov: Information Systems Department, Ivannikov Institute for System Programming, Russian Academy of Sciences (ISP RAS), 109004 Moscow, Russia
Andrey Ivanov: Information Systems Department, Ivannikov Institute for System Programming, Russian Academy of Sciences (ISP RAS), 109004 Moscow, Russia
Konstantin Midiber: A.P. Avtsyn Scientific Research Institute of Human Morphology, 117418 Moscow, Russia
Tatyana Khovanskaya: A.P. Avtsyn Scientific Research Institute of Human Morphology, 117418 Moscow, Russia
Alexandra Konyukova: A.P. Avtsyn Scientific Research Institute of Human Morphology, 117418 Moscow, Russia
Polina Vishnyakova: Medical Institute, Peoples’ Friendship University of Russia (RUDN University), 117198 Moscow, Russia
Sergei Nora: Department of Microbiology, Immunology and Infectious Diseases, Yaroslav-the-Wise Novgorod State University, 173003 Veliky Novgorod, Russia
Liudmila Mikhaleva: A.P. Avtsyn Scientific Research Institute of Human Morphology, 117418 Moscow, Russia
Timur Fatkhudinov: A.P. Avtsyn Scientific Research Institute of Human Morphology, 117418 Moscow, Russia
Evgeny Karpulevich: Information Systems Department, Ivannikov Institute for System Programming, Russian Academy of Sciences (ISP RAS), 109004 Moscow, Russia

DOI: https://doi.org/10.3390/data7060075
Journal volume & issue: Vol. 7, no. 6
p. 75

Abstract

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We present EndoNuke, an open dataset consisting of tiles from endometrium immunohistochemistry slides with the nuclei annotated as keypoints. Several experts with various experience have annotated the dataset. Apart from gathering the data and creating the annotation, we have performed an agreement study and analyzed the distribution of nuclei staining intensity.

Published in Data

ISSN: 2306-5729 (Online)
Publisher: MDPI AG
Country of publisher: Switzerland
LCC subjects: Bibliography. Library science. Information resources
Website: http://www.mdpi.com/journal/data

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