Visual transformer and deep CNN prediction of high-risk COVID-19 infected patients using fusion of CT images and clinical data

Abstract

Abstract Background Despite the globally reducing hospitalization rates and the much lower risks of Covid-19 mortality, accurate diagnosis of the infection stage and prediction of outcomes are clinically of interest. Advanced current technology can facilitate automating the process and help identifying those who are at higher risks of developing severe illness. This work explores and represents deep-learning-based schemes for predicting clinical outcomes in Covid-19 infected patients, using Visual Transformer and Convolutional Neural Networks (CNNs), fed with 3D data fusion of CT scan images and patients’ clinical data. Methods We report on the efficiency of Video Swin Transformers and several CNN models fed with fusion datasets and CT scans only vs. a set of conventional classifiers fed with patients’ clinical data only. A relatively large clinical dataset from 380 Covid-19 diagnosed patients was used to train/test the models. Results Results show that the 3D Video Swin Transformers fed with the fusion datasets of 64 sectional CT scans + 67 clinical labels outperformed all other approaches for predicting outcomes in Covid-19-infected patients amongst all techniques (i.e., TPR = 0.95, FPR = 0.40, F0.5 score = 0.82, AUC = 0.77, Kappa = 0.6). Conclusions We demonstrate how the utility of our proposed novel 3D data fusion approach through concatenating CT scan images with patients’ clinical data can remarkably improve the performance of the models in predicting Covid-19 infection outcomes. Significance Findings indicate possibilities of predicting the severity of outcome using patients’ CT images and clinical data collected at the time of admission to hospital.

Keywords

• Deep learning
• Visual transformer
• Predictive models
• Convolutional neural network (CNN)
• Covid-19 detection
• CT scan