BMC Bioinformatics (Nov 2019)

Attention-based recurrent neural network for influenza epidemic prediction

  • Xianglei Zhu,
  • Bofeng Fu,
  • Yaodong Yang,
  • Yu Ma,
  • Jianye Hao,
  • Siqi Chen,
  • Shuang Liu,
  • Tiegang Li,
  • Sen Liu,
  • Weiming Guo,
  • Zhenyu Liao

DOI
https://doi.org/10.1186/s12859-019-3131-8
Journal volume & issue
Vol. 20, no. S18
pp. 1 – 10

Abstract

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Abstract Background Influenza is an infectious respiratory disease that can cause serious public health hazard. Due to its huge threat to the society, precise real-time forecasting of influenza outbreaks is of great value to our public. Results In this paper, we propose a new deep neural network structure that forecasts a real-time influenza-like illness rate (ILI%) in Guangzhou, China. Long short-term memory (LSTM) neural networks is applied to precisely forecast accurateness due to the long-term attribute and diversity of influenza epidemic data. We devise a multi-channel LSTM neural network that can draw multiple information from different types of inputs. We also add attention mechanism to improve forecasting accuracy. By using this structure, we are able to deal with relationships between multiple inputs more appropriately. Our model fully consider the information in the data set, targetedly solving practical problems of the Guangzhou influenza epidemic forecasting. Conclusion We assess the performance of our model by comparing it with different neural network structures and other state-of-the-art methods. The experimental results indicate that our model has strong competitiveness and can provide effective real-time influenza epidemic forecasting.

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