Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

Zachary M. Turpin; Daniel L. Vera; Savannah D. Savadel; Pei-Yau Lung; Emily E. Wear; Leigh Mickelson-Young; William F. Thompson; Linda Hanley-Bowdoin; Jonathan H. Dennis; Jinfeng Zhang; Hank W. Bass

Data in Brief (Oct 2018)

Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

Zachary M. Turpin,
Daniel L. Vera,
Savannah D. Savadel,
Pei-Yau Lung,
Emily E. Wear,
Leigh Mickelson-Young,
William F. Thompson,
Linda Hanley-Bowdoin,
Jonathan H. Dennis,
Jinfeng Zhang,
Hank W. Bass

Affiliations

Zachary M. Turpin: Department of Biological Science, Florida State University, Tallahassee, FL 32306-4295, USA
Daniel L. Vera: Center for Genomics and Personalized Medicine, Florida State University, Tallahassee, FL, USA
Savannah D. Savadel: Department of Biological Science, Florida State University, Tallahassee, FL 32306-4295, USA
Pei-Yau Lung: Department of Statistics, Florida State University, Tallahassee, FL, 32306, USA
Emily E. Wear: Department of Plant and Microbial Biology, North Carolina State University, Raleigh 27606, USA
Leigh Mickelson-Young: Department of Plant and Microbial Biology, North Carolina State University, Raleigh 27606, USA
William F. Thompson: Department of Plant and Microbial Biology, North Carolina State University, Raleigh 27606, USA
Linda Hanley-Bowdoin: Department of Plant and Microbial Biology, North Carolina State University, Raleigh 27606, USA
Jonathan H. Dennis: Department of Biological Science, Florida State University, Tallahassee, FL 32306-4295, USA
Jinfeng Zhang: Department of Statistics, Florida State University, Tallahassee, FL, 32306, USA
Hank W. Bass: Department of Biological Science, Florida State University, Tallahassee, FL 32306-4295, USA; Corresponding author.

Journal volume & issue: Vol. 20
pp. 358 – 363

Abstract

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Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq difference profiles. The data repository for the sequence data is the NCBI SRA, BioProject Accession PRJNA445708.

Published in Data in Brief

ISSN: 2352-3409 (Online)
Publisher: Elsevier
Country of publisher: United States
LCC subjects: Medicine: Medicine (General): Computer applications to medicine. Medical informatics; Science: Science (General)
Website: http://www.journals.elsevier.com/data-in-brief/

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