NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test

• David Dylus,
• David Dylus,
• David Dylus,
• Trestan Pillonel,
• Onya Opota,
• Daniel Wüthrich,
• Daniel Wüthrich,
• Helena M. B. Seth-Smith,
• Helena M. B. Seth-Smith,
• Adrian Egli,
• Adrian Egli,
• Stefano Leo,
• Vladimir Lazarevic,
• Jacques Schrenzel,
• Sacha Laurent,
• Claire Bertelli,
• Dominique S. Blanc,
• Stefan Neuenschwander,
• Alban Ramette,
• Laurent Falquet,
• Laurent Falquet,
• Frank Imkamp,
• Peter M. Keller,
• Andre Kahles,
• Andre Kahles,
• Simone Oberhaensli,
• Simone Oberhaensli,
• Valérie Barbié,
• Christophe Dessimoz,
• Christophe Dessimoz,
• Christophe Dessimoz,
• Christophe Dessimoz,
• Christophe Dessimoz,
• Gilbert Greub,
• Aitana Lebrand

Affiliations

David Dylus

Department of Computational Biology, University of Lausanne, Lausanne, Switzerland

David Dylus

Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland

David Dylus

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Trestan Pillonel

Institute of Microbiology, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland

Onya Opota

Institute of Microbiology, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland

Daniel Wüthrich

Division of Clinical Bacteriology and Mycology, University Hospital of Basel, Basel, Switzerland

Daniel Wüthrich

Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland

Helena M. B. Seth-Smith

Division of Clinical Bacteriology and Mycology, University Hospital of Basel, Basel, Switzerland

Helena M. B. Seth-Smith

Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland

Adrian Egli

Division of Clinical Bacteriology and Mycology, University Hospital of Basel, Basel, Switzerland

Adrian Egli

Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland

Stefano Leo

Bacteriology Laboratory, Division of Laboratory Medicine, Department of Genetics Laboratory Medicine and Pathology, Geneva University Hospitals, Geneva, Switzerland

Vladimir Lazarevic

Bacteriology Laboratory, Division of Laboratory Medicine, Department of Genetics Laboratory Medicine and Pathology, Geneva University Hospitals, Geneva, Switzerland

Jacques Schrenzel

Bacteriology Laboratory, Division of Laboratory Medicine, Department of Genetics Laboratory Medicine and Pathology, Geneva University Hospitals, Geneva, Switzerland

Sacha Laurent

Institute of Microbiology, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland

Claire Bertelli

Institute of Microbiology, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland

Dominique S. Blanc

Service of Hospital Preventive Medicine, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland

Stefan Neuenschwander

Institute for Infectious Diseases, University of Bern, Bern, Switzerland

Alban Ramette

Institute for Infectious Diseases, University of Bern, Bern, Switzerland

Laurent Falquet

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Laurent Falquet

0Department of Biology, University of Fribourg, Fribourg, Switzerland

Frank Imkamp

1Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland

Peter M. Keller

1Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland

Andre Kahles

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Andre Kahles

2Biomedical Informatics, Swiss Federal Institute of Technology (ETH Zürich), ETH Zürich, Zurich, Switzerland

Simone Oberhaensli

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Simone Oberhaensli

3Interfaculty Bioinformatics Unit, University of Bern, Bern, Switzerland

Valérie Barbié

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Christophe Dessimoz

Department of Computational Biology, University of Lausanne, Lausanne, Switzerland

Christophe Dessimoz

Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland

Christophe Dessimoz

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland

Christophe Dessimoz

4Department of Genetics, Evolution and Environment, University College London, London, United Kingdom

Christophe Dessimoz

5Department of Computer Science, University College London, London, United Kingdom

Gilbert Greub

Institute of Microbiology, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland

Aitana Lebrand

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland