Journal of Integrative Bioinformatics (Jul 2019)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

  • Schreiber Falk,
  • Sommer Björn,
  • Bader Gary D.,
  • Gleeson Padraig,
  • Golebiewski Martin,
  • Hucka Michael,
  • Keating Sarah M.,
  • König Matthias,
  • Myers Chris,
  • Nickerson David,
  • Waltemath Dagmar

DOI
https://doi.org/10.1515/jib-2019-0035
Journal volume & issue
Vol. 16, no. 2
pp. 19 – 95

Abstract

Read online

This special issue of the Journal of Integrative Bioinformatics presents an overview of COMBINE standards and their latest specifications. The standards cover representation formats for computational modeling in synthetic and systems biology and include BioPAX, CellML, NeuroML, SBML, SBGN, SBOL and SED-ML. The articles in this issue contain updated specifications of SBGN Process Description Level 1 Version 2, SBML Level 3 Core Version 2 Release 2, SBOL Version 2.3.0, and SBOL Visual Version 2.1.