Nature Communications (Nov 2020)
Dominant subtype switch in avian influenza viruses during 2016–2019 in China
- Yuhai Bi,
- Juan Li,
- Shanqin Li,
- Guanghua Fu,
- Tao Jin,
- Cheng Zhang,
- Yongchun Yang,
- Zhenghai Ma,
- Wenxia Tian,
- Jida Li,
- Shuqi Xiao,
- Liqiang Li,
- Renfu Yin,
- Yi Zhang,
- Lixin Wang,
- Yantao Qin,
- Zhongzi Yao,
- Fanyu Meng,
- Dongfang Hu,
- Delong Li,
- Gary Wong,
- Fei Liu,
- Na Lv,
- Liang Wang,
- Lifeng Fu,
- Yang Yang,
- Yun Peng,
- Jinmin Ma,
- Kirill Sharshov,
- Alexander Shestopalov,
- Marina Gulyaeva,
- George F. Gao,
- Jianjun Chen,
- Yi Shi,
- William J. Liu,
- Dong Chu,
- Yu Huang,
- Yingxia Liu,
- Lei Liu,
- Wenjun Liu,
- Quanjiao Chen,
- Weifeng Shi
Affiliations
- Yuhai Bi
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Juan Li
- Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong, Shandong First Medical University & Shandong Academy of Medical Sciences
- Shanqin Li
- University of Chinese Academy of Sciences
- Guanghua Fu
- Institute of Animal Husbandry and Veterinary Medicine, Fujian Academy of Agricultural Sciences
- Tao Jin
- China National Genebank-Shenzhen, BGI-Shenzhen
- Cheng Zhang
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Yongchun Yang
- Zhejiang Provincial Engineering Laboratory for Animal Health Inspection & Internet Technology, College of Animal Science and Technology & College of Veterinary Medicine of Zhejiang A&F University
- Zhenghai Ma
- College of Life Science and Technology, Xinjiang University
- Wenxia Tian
- College of Animal Science and Veterinary Medicine, Shanxi Agricultural University
- Jida Li
- Institute of Zoonosis, College of Public Hygiene, Zunyi Medical University
- Shuqi Xiao
- College of Veterinary Medicine, Northwest A&F University
- Liqiang Li
- China National Genebank-Shenzhen, BGI-Shenzhen
- Renfu Yin
- Department of Veterinary Preventive Medicine, College of Veterinary Medicine, Jilin University
- Yi Zhang
- Institute of Zoonosis, College of Public Hygiene, Zunyi Medical University
- Lixin Wang
- School of Basic Medicine and Life Science, Hainan Medical University
- Yantao Qin
- Diqing Tibetan Autonomous Prefecture Centers for Disease Control and Prevention
- Zhongzi Yao
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, CASCIRE, Chinese Academy of Sciences
- Fanyu Meng
- Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong, Shandong First Medical University & Shandong Academy of Medical Sciences
- Dongfang Hu
- College of Animal Science and Technology, Henan Institute of Science and Technology
- Delong Li
- College of Animal Science, Southwest University
- Gary Wong
- Institut Pasteur of Shanghai, Chinese Academy of Sciences
- Fei Liu
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Na Lv
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Liang Wang
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Lifeng Fu
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Yang Yang
- University of Chinese Academy of Sciences
- Yun Peng
- University of Chinese Academy of Sciences
- Jinmin Ma
- China National Genebank-Shenzhen, BGI-Shenzhen
- Kirill Sharshov
- Federal Research Center of Fundamental and Translational Medicine, Federal State Budget Scientific Institution, Siberian Branch of Russian Academy of Sciences, Novosibirsk State University
- Alexander Shestopalov
- Federal Research Center of Fundamental and Translational Medicine, Federal State Budget Scientific Institution, Siberian Branch of Russian Academy of Sciences, Novosibirsk State University
- Marina Gulyaeva
- Federal Research Center of Fundamental and Translational Medicine, Federal State Budget Scientific Institution, Siberian Branch of Russian Academy of Sciences, Novosibirsk State University
- George F. Gao
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Jianjun Chen
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, CASCIRE, Chinese Academy of Sciences
- Yi Shi
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- William J. Liu
- National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC)
- Dong Chu
- General Station for Surveillance of Wildlife-borne Infectious Diseases, State Forestry and Grassland Administration
- Yu Huang
- Institute of Animal Husbandry and Veterinary Medicine, Fujian Academy of Agricultural Sciences
- Yingxia Liu
- Shenzhen Key Laboratory of Pathogen and Immunity, Guangdong Key Laboratory for Diagnosis and Treatment of Emerging Infectious Diseases, State Key Discipline of Infectious Disease, Second Hospital Affiliated to Southern University of Science and Technology, Shenzhen Third People’s Hospital
- Lei Liu
- Shenzhen Key Laboratory of Pathogen and Immunity, Guangdong Key Laboratory for Diagnosis and Treatment of Emerging Infectious Diseases, State Key Discipline of Infectious Disease, Second Hospital Affiliated to Southern University of Science and Technology, Shenzhen Third People’s Hospital
- Wenjun Liu
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID, Chinese Academy of Sciences
- Quanjiao Chen
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, CASCIRE, Chinese Academy of Sciences
- Weifeng Shi
- Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong, Shandong First Medical University & Shandong Academy of Medical Sciences
- DOI
- https://doi.org/10.1038/s41467-020-19671-3
- Journal volume & issue
-
Vol. 11,
no. 1
pp. 1 – 12
Abstract
In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of variants have emerged since 2016 that pose an increased risk to humans. They highlight the importance of continuous genome surveillance of circulating influenza strains.
