F1000Research (Jul 2020)

MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context [version 2; peer review: 2 approved]

  • Julia Koblitz,
  • Dietmar Schomburg,
  • Meina Neumann-Schaal

DOI
https://doi.org/10.12688/f1000research.23427.2
Journal volume & issue
Vol. 9

Abstract

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Metabolic pathways are an important part of systems biology research since they illustrate complex interactions between metabolites, enzymes, and regulators. Pathway maps are drawn to elucidate metabolism or to set data in a metabolic context. We present MetaboMAPS, a web-based platform to visualize numerical data on individual metabolic pathway maps. Metabolic maps can be stored, distributed and downloaded in SVG-format. MetaboMAPS was designed for users without computational background and supports pathway sharing without strict conventions. In addition to existing applications that established standards for well-studied pathways, MetaboMAPS offers a niche for individual, customized pathways beyond common knowledge, supporting ongoing research by creating publication-ready visualizations of experimental data.