A CRISPR-Based Screen Identifies Genes Essential for West-Nile-Virus-Induced Cell Death

Hongming Ma; Ying Dang; Yonggan Wu; Gengxiang Jia; Edgar Anaya; Junli Zhang; Sojan Abraham; Jang-Gi Choi; Guojun Shi; Ling Qi; N. Manjunath; Haoquan Wu

doi:10.1016/j.celrep.2015.06.049

Cell Reports (Jul 2015)

A CRISPR-Based Screen Identifies Genes Essential for West-Nile-Virus-Induced Cell Death

Hongming Ma,
Ying Dang,
Yonggan Wu,
Gengxiang Jia,
Edgar Anaya,
Junli Zhang,
Sojan Abraham,
Jang-Gi Choi,
Guojun Shi,
Ling Qi,
N. Manjunath,
Haoquan Wu

Affiliations

Hongming Ma: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Ying Dang: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Yonggan Wu: Labii LLC, Mountain View, CA 94043, USA
Gengxiang Jia: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Edgar Anaya: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Junli Zhang: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Sojan Abraham: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Jang-Gi Choi: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Guojun Shi: Division of Nutritional Sciences, Cornell University, Ithaca, NY 14853, USA
Ling Qi: Division of Nutritional Sciences, Cornell University, Ithaca, NY 14853, USA
N. Manjunath: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA
Haoquan Wu: Center of Emphasis in Infectious Diseases, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX 79905, USA

DOI: https://doi.org/10.1016/j.celrep.2015.06.049
Journal volume & issue: Vol. 12, no. 4
pp. 673 – 683

Abstract

Read online

West Nile virus (WNV) causes an acute neurological infection attended by massive neuronal cell death. However, the mechanism(s) behind the virus-induced cell death is poorly understood. Using a library containing 77,406 sgRNAs targeting 20,121 genes, we performed a genome-wide screen followed by a second screen with a sub-library. Among the genes identified, seven genes, EMC2, EMC3, SEL1L, DERL2, UBE2G2, UBE2J1, and HRD1, stood out as having the strongest phenotype, whose knockout conferred strong protection against WNV-induced cell death with two different WNV strains and in three cell lines. Interestingly, knockout of these genes did not block WNV replication. Thus, these appear to be essential genes that link WNV replication to downstream cell death pathway(s). In addition, the fact that all of these genes belong to the ER-associated protein degradation (ERAD) pathway suggests that this might be the primary driver of WNV-induced cell death.

Published in Cell Reports

ISSN: 2211-1247 (Online)
Publisher: Elsevier
Country of publisher: Netherlands
LCC subjects: Science: Biology (General)
Website: http://www.cell.com/cell-reports/home

About the journal