Nature Communications (Jul 2022)

Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli

  • Alla Gagarinova,
  • Ali Hosseinnia,
  • Matineh Rahmatbakhsh,
  • Zoe Istace,
  • Sadhna Phanse,
  • Mohamed Taha Moutaoufik,
  • Mara Zilocchi,
  • Qingzhou Zhang,
  • Hiroyuki Aoki,
  • Matthew Jessulat,
  • Sunyoung Kim,
  • Khaled A. Aly,
  • Mohan Babu

DOI
https://doi.org/10.1038/s41467-022-31819-x
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 16

Abstract

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The bacterium E. coli has around 300 transcriptional factors, but the functions of many of them, and the interactions between their respective regulatory networks, are unclear. Here, the authors study genetic interactions among all transcription factor genes in E. coli, revealing condition-dependent interactions and roles for uncharacterized transcription factors.