Scientific Reports (May 2023)
Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
- Mehmet Gul,
- Esra Ayan,
- Ebru Destan,
- J. Austin Johnson,
- Alaleh Shafiei,
- Abdullah Kepceoğlu,
- Merve Yilmaz,
- Fatma Betül Ertem,
- İlkin Yapici,
- Bilge Tosun,
- Nilüfer Baldir,
- Nurettin Tokay,
- Zeliş Nergiz,
- Gözde Karakadioğlu,
- Seyide Seda Paydos,
- Cahine Kulakman,
- Cengiz Kaan Ferah,
- Ömür Güven,
- Necati Atalay,
- Enver Kamil Akcan,
- Haluk Cetinok,
- Nazlı Eylül Arslan,
- Kardelen Şabanoğlu,
- Bengisu Aşci,
- Serra Tavli,
- Helin Gümüsboğa,
- Sevde Altuntaş,
- Masami Otsuka,
- Mikako Fujita,
- Şaban Teki̇n,
- Halilibrahim Çi̇ftçi̇,
- Serdar Durdaği,
- Ezgi Karaca,
- Burcu Kaplan Türköz,
- Burak Veli Kabasakal,
- Ahmet Kati,
- Hasan DeMi̇rci̇
Affiliations
- Mehmet Gul
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Esra Ayan
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Ebru Destan
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- J. Austin Johnson
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Alaleh Shafiei
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Abdullah Kepceoğlu
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Merve Yilmaz
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Fatma Betül Ertem
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- İlkin Yapici
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Bilge Tosun
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Nilüfer Baldir
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Nurettin Tokay
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Zeliş Nergiz
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Gözde Karakadioğlu
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Seyide Seda Paydos
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Cahine Kulakman
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Cengiz Kaan Ferah
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Ömür Güven
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Necati Atalay
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Enver Kamil Akcan
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Haluk Cetinok
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Nazlı Eylül Arslan
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Kardelen Şabanoğlu
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Bengisu Aşci
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Serra Tavli
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Helin Gümüsboğa
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Sevde Altuntaş
- Experimental Medicine Application & Research Center, University of Health Sciences Türkiye
- Masami Otsuka
- Medicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University
- Mikako Fujita
- Medicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University
- Şaban Teki̇n
- The Scientific and Technological Research Council of Türkiye (TÜBİTAK) Marmara Research Center (MAM), Life Sciences
- Halilibrahim Çi̇ftçi̇
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- Serdar Durdaği
- Department of Biophysics, School of Medicine, Bahcesehir University
- Ezgi Karaca
- Izmir Biomedicine and Genome Center
- Burcu Kaplan Türköz
- Department of Food Engineering, Faculty of Engineering, Ege University
- Burak Veli Kabasakal
- Turkish Accelerator and Radiation Laboratory (TARLA), Ankara University
- Ahmet Kati
- Experimental Medicine Application & Research Center, University of Health Sciences Türkiye
- Hasan DeMi̇rci̇
- Department of Molecular Biology and Genetics, Faculty of Science, Koç University
- DOI
- https://doi.org/10.1038/s41598-023-33989-0
- Journal volume & issue
-
Vol. 13,
no. 1
pp. 1 – 10
Abstract
Abstract High-resolution biomacromolecular structure determination is essential to better understand protein function and dynamics. Serial crystallography is an emerging structural biology technique which has fundamental limitations due to either sample volume requirements or immediate access to the competitive X-ray beamtime. Obtaining a high volume of well-diffracting, sufficient-size crystals while mitigating radiation damage remains a critical bottleneck of serial crystallography. As an alternative, we introduce the plate-reader module adapted for using a 72-well Terasaki plate for biomacromolecule structure determination at a convenience of a home X-ray source. We also present the first ambient temperature lysozyme structure determined at the Turkish light source (Turkish DeLight). The complete dataset was collected in 18.5 min with resolution extending to 2.39 Å and 100% completeness. Combined with our previous cryogenic structure (PDB ID: 7Y6A), the ambient temperature structure provides invaluable information about the structural dynamics of the lysozyme. Turkish DeLight provides robust and rapid ambient temperature biomacromolecular structure determination with limited radiation damage.